Fast patterning of highly conductive polymers like PEDOT:PSS (poly (3,4-ethylene dioxythiophene) : polystyrene sulfonate) with lasers can contribute to the development of industrial production of liquid crystal displays on polymer foils. In this article, the selective UV laser patterning of a PEDOT:PSS film on flexible polymer films is investigated. Based on their optical properties, three polymer films are investigated: polyethylene terephthalate (PET), polymethyl methacrylate (PMMA) and cellulose triacetate (TAC). Ablation parameters for a 110 nm PEDOT:PSS film on these polymer films are optimized. A detailed study of the crater depth, topography and surface composition are provided using optical profilometry, scanning electron microscopy (SEM) and X-ray photoelectron spectroscopy (XPS), respectively. The electrical insulation of the lines is measured and correlated to the crater analyses for different laser settings. Finally, potential ablation parameters for each of the polymer films are derived.